Quantum-chemical study of the activity of glycine, threonine and their dipeptides in relation to free radicals
DOI:
https://doi.org/10.33581/2520-257X-2026-1-%25pKeywords:
glycine, threonine, dipeptides, threonyl-threonine, cyclo(di(threonine)), antiradical activity, density functional theory, quantum-chemical calculationAbstract
A methodology for quantum-chemical studies of the antioxidant activity of compounds of various nature has been developed. Reactivity of glycine, threonine and their dipeptides with respect to active species obtained in test systems using peroxyl radicals ${\text{(RO}}{{\text{O}}^ \bullet })$ and cation radicals of 2,2¢-azino-bis-(3-ethylbenzothiazoline-6-sulfonic acid) ${\text{(ABT}}{{\text{S}}^{ \bullet {\text{ + }}}})$ has been compared with the results of calculations. The most probable sites of hydrogen atom abstraction from amino acids and dipeptides molecules in the gas phase and aqueous solution has been determined by calculating the thermodynamic characteristics of the corresponding radicals. To assess the tendency of compounds to exhibit antioxidant activity via the hydrogen atom transfer mechanism, the Gibbs energies of reactions with \[{\text{HO}}_{\text{2}}^ \bullet \], ${\text{RO}}{{\text{O}}^ \bullet }$ and \[{\text{H}}{{\text{O}}^ \bullet }\] radicals, as well as the activation barriers for the thermodynamically most favourable processes of hydrogen atom abstraction by the \[{\text{HO}}_{\text{2}}^ \bullet \] radical, has been calculated. The ability of the compounds to exhibit antioxidant activity via the single electron transfer mechanism has been assessed by calculating adiabatic ionisation potentials and the energies of the highest occupied molecular orbital. The antioxidant activity series of the studied compounds, constructed based on the calculated descriptors, are consistent with experimental data. Analysis of the electron density distribution in molecules and radicals has made it possible to explain the experimentally observed differences in the antioxidant activity of glycine, glycyl-glycine, threonine and its linear and cyclic dipeptides.
References
Sen S, Chakraborty R. The role of antioxidants in human health. In: Andreescu S, Hepel M, editors. Oxidative stress: diagnostics, prevention, and therapy. Washington: American Chemical Society; 2011. p. 1–37 (ACS symposium series; volume 1083). DOI: 10.1021/bk-2011-1083.ch001.
Pokorny J, Yanishlieva N, Gordon M, editors. Antioxidants in food: practical applications. Boca Raton: CRC Press; 2001. XV, 380 p. Co-published by the Woodhead Publishing Limited.
de Lima Cherubim DJ, Buzanello Martins СV, Oliveira Fariña L, da Silva de Lucca RA. Polyphenols as natural antioxidants in cosmetics applications. Journal of Cosmetic Dermatology. 2020;19(1):33 –37. DOI: 10.1111/jocd.13093.
Craik DJ, Fairlie DP, Liras S, Price D. The future of peptide‐based drugs. Chemical Biology & Drug Design. 2013;81(1):136 –147. DOI: 10.1111/cbdd.12055.
Cao G, Alessio HM, Cutler RG. Oxygen radical absorbance capacity assay for antioxidants. Free Radical Biology and Medicine. 1993;14(3):303 –311. DOI: 10.1016/0891-5849(93)90027-R.
Ou B, Hampsch-Woodill M, Prior RL. Development and validation of an improved oxygen radical absorbance capacity assay using fluorescein as the fluorescent probe. Journal of Agricultural and Food Chemistry. 2001;49(10):4619 – 4626. DOI: 10.1021/jf010586o.
Re R, Pellegrini N, Proteggente A, Pannala A, Yang M, Rice-Evans C. Antioxidant activity applying an improved ABTS radical cation decolorization assay. Free Radical Biology and Medicine. 1999;26(9 –10):1231–1237. DOI: 10.1016/S0891-5849(98)00315-3.
Esfandi R, Walters ME, Tsopmo A. Antioxidant properties and potential mechanisms of hydrolyzed proteins and peptides from cereals. Heliyon. 2019;5(4):e01538. DOI: 10.1016/j.heliyon.2019.e01538.
Пипко АО, Кулеш АВ, Овсянникова ЕМ, Ермак АД, Каранкевич ЕГ, Юркова ИЛ. In vitro активность дипептидов в отношении свободных радикалов, генерируемых 2,2′-азо-бис-(2-амидинопропаном) и 2,2′-азино-бис-(3-этилбензотиазолин-6-сульфоновой кислотой). В: Ивашкевич ОА, Воробьева ТН, Артемьев МВ, Аршанский ЕЯ, Василевская ЕИ, Кунцевич ЗС и др., редакторы. Свиридовские чтения. Выпуск 21. Минск: СтройМедиаПроект; 2025. с. 129 –145.
Staroverov VN, Scuseria GE, Tao J, Perdew JP. Comparative assessment of a new nonempirical density functional: molecules and hydrogen-bonded complexes. The Journal of Chemical Physics. 2003;119(23):12129 –12137. DOI: 10.1063/1.1626543.
Jensen KP. Bioinorganic chemistry modeled with the TPSSh density functional. Inorganic Chemistry. 2008;47(22):10357–10365. DOI: 10.1021/ic800841t.
Gera E, Vignesh KR. A systematic comparison of density functional methods for determining spin-state energy gaps and spin transition temperature of spin crossover complexes. RSC Advances. 2026;16(3):2241–2254. DOI: 10.1039/D5RA09636G.
Francl MM, Pietro WJ, Hehre WJ, Binkley JS, Gordon MS, DeFrees DJ, et al. Self‐consistent molecular orbital methods. XXIII. A polarization‐type basis set for second‐row elements. The Journal of Chemical Physics. 1982;77(7):3654 –3665. DOI: 10.1063/1.444267.
Spitznagel GW, Clark T, von Ragué Schleyer P, Hehre WJ. An evaluation of the performance of diffuse function‐augmented basis sets for second row elements, Na – Cl. Journal of Computational Chemistry. 1987;8(8):1109 –1116. DOI: 10.1002/jcc.540080807.
Spiegel M. Current trends in computational quantum chemistry studies on antioxidant radical scavenging activity. Journal of Chemical Information and Modeling. 2022;62(11):2639 –2658. DOI: 10.1021/acs.jcim.2c00104.
Marenich AV, Cramer CJ, Truhlar DG. Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. The Journal of Physical Chemistry B. 2009;113(18):6378 – 6396. DOI: 10.1021/jp810292n.
Alov P, Tsakovska I, Pajeva I. Computational studies of free radical-scavenging properties of phenolic compounds. Current Topics in Medicinal Chemistry. 2015;15(2):85 –104. DOI: 10.2174/1568026615666141209143702.
Оганесян ЭТ, Шатохин СС, Глушко АА. Использование квантово-химических параметров для прогнозирования антирадикальной активности родственных структур, содержащих циннамоильный фрагмент. I. Производные коричной кислоты, халкона и флаванона. Фармация и фармакология. 2019;7(1):53 – 66. DOI: 10.19163/2307-9266-2019-7-1-53-66.
Hoa NT. The hydroperoxyl antiradical activity of Trolox in water: the effects of pH values on rate constants. The EuroBiotech Journal. 2022;6(2):44 – 48. DOI: 10.2478/ebtj-2022-0006.
Doseděl M, Jirkovský E, Macáková K, Kujovská Krčmová L, Javorská L, Pourová J, et al. Vitamin C – sources, physiological role, kinetics, deficiency, use, toxicity, and determination. Nutrients. 2021;13(2):615. DOI: 10.3390/nu13020615.
Cohn EJ, Edsall JT, Kirkwood JG, Mueller H, Oncley JL, Scatchard G. Proteins, amino acids and peptides as ions and dipolar ions. New York: Reinhold Publishing Corporation; 1943. XVIII, 686 p. (American Chemical Society monograph series; number 90).
Zuo Z, MacMillan DWC. Decarboxylative arylation of α-amino acids via photoredox catalysis: a one-step conversion of biomass to drug pharmacophore. Journal of the American Chemical Society. 2014;136(14):5257–5260. DOI: 10.1021/ja501621q.
Shi C, Gao L, Baumgarten M, Wei D, Xu Z, Wang W, et al. Homoconjugation mediated spin-spin coupling in triptycene nitronyl nitroxide diradicals. Magnetochemistry. 2023;9(7):178. DOI: 10.3390/magnetochemistry9070178.
Kovacic P. Protein electron transfer (mechanism and reproductive toxicity): iminium, hydrogen bonding, homoconjugation, amino acid side chains (redox and charged), and cell signaling. Birth Defects Research. Part C, Embryo Today: Reviews. 2007;81(1):51– 64. DOI: 10.1002/bdrc.20086.
Torkova A, Koroleva O, Khrameeva E, Fedorova T, Tsentalovich M. Structure-functional study of tyrosine and methionine dipeptides: an approach to antioxidant activity prediction. International Journal of Molecular Sciences. 2015;16(10):25353 –25376. DOI: 10.3390/ijms161025353.
Downloads
Additional Files
Published
Issue
Section
License
Copyright (c) 2026 Journal of the Belarusian State University. Chemistry

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
The authors who are published in this journal agree to the following:
- The authors retain copyright on the work and provide the journal with the right of first publication of the work on condition of license Creative Commons Attribution-NonCommercial. 4.0 International (CC BY-NC 4.0).
- The authors retain the right to enter into certain contractual agreements relating to the non-exclusive distribution of the published version of the work (e.g. post it on the institutional repository, publication in the book), with the reference to its original publication in this journal.
- The authors have the right to post their work on the Internet (e.g. on the institutional store or personal website) prior to and during the review process, conducted by the journal, as this may lead to a productive discussion and a large number of references to this work. (See The Effect of Open Access.)














