Identification of pectolytic bacterial species isolated during plant bacteriosis in the Republic of Belarus

  • Shao Chengyue Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus
  • Yuri N. Gorovik Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus
  • Swetlana G. Sidorova Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus
  • Anatoli N. Evtushenkov Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus

Abstract

During 2019 –2020, we selected 75 samples of potatoes, carrots, turnips, cabbage, onions, both in the field and from storage. Bacteria of the genus Pectobacterium were isolated from 60 samples. Strains of Bacillus pumilus, Bacillus sp. and Pseudomonas sp. were also isolated. The dominant species causing soft rot and black leg of potato were Pectobacterium carotovorum, P. parmentieri, P. atrosepticum and P. brasiliense. Bacterium P. carotovorum was isolated from other vegetable crops. In samples of carrots and potatoes, strains of bacteria of the genus Bacillus were often isolated from storage. For the first time in Belarus, we found the bacterium P. brasiliense on potato plants. The results obtained on the identification and spread of soft rot bacteria in Belarus will help plan the risks associated with infections caused by these pathogens.

Author Biographies

Shao Chengyue, Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus

postgraduate student at the department of molecular biology, faculty of biology

Yuri N. Gorovik, Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus

senior lecturer at the department of molecular biology, faculty of biology

Swetlana G. Sidorova, Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus

PhD (biology), docent; associate professor at the department of botany, faculty of biology

Anatoli N. Evtushenkov, Belarusian State University, 4 Niezaliežnasci Avenue, Minsk 220030, Belarus

doctor of science (biology), full professor; head of the department of molecular biology, faculty of biology

References

  1. Waldee EL. Comparative studies of some peritrichous phytopathogenic bacteria. Iowa State College Journal of Science. 1945;19(4):435–484.
  2. Dye DW. A taxonomic study of the genus Erwinia. I. The amylovora group. New Zealand Journal of Science. 1968;11(4):590–607.
  3. Adeolu M, Alnajar S, Naushad S, Gupta RS. Genome-based phylogeny and taxonomy of the Enterobacteriales: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology. 2016;66(12):5575–5599. DOI: 10.1099/ijsem.0.001485.
  4. Portier P, Pédron J, Taghouti G, Fischer-Le Saux M, Caullireau E, Bertrand C, et al. Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants. International Journal of Systematic and Evolutionary Microbiology. 2019;69(10):3207–3216. DOI: 10.1099/ijsem.0.003611.
  5. Pédron J, Bertrand C, Taghouti G, Portier P, Barny M-A. Pectobacterium aquaticum sp. nov., isolated from waterways. International Journal of Systematic and Evolutionary Microbiology. 2019;69(3):745–751. DOI: 10.1099/ijsem.0.003229.
  6. Nabhan S, De Boer SH, Maiss E, Wydra K. Pectobacterium aroidearum sp. nov., a soft rot pathogen with preference for monocotyledonous plants. International Journal of Systematic and Evolutionary Microbiology. 2013;63(7):2520–2525. DOI: 10.1099/ijs.0.046011-0.
  7. Gardan L, Gouy C, Christen R, Samson R. Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov. International Journal of Systematic and Evolutionary Microbiology. 2003;53(2):381–391. DOI: 10.1099/ijs.0.02423-0.
  8. Alcorn SM, Orum TV, Steigerwalt AG, Foster JLM, Fogleman JC, Brenner DJ. Taxonomy and pathogenicity of Erwinia cacticida sp. nov. International Journal of Systematic Bacteriology. 1991;41(2):197–212. DOI: 10.1099/00207713-41-2-197.
  9. Oulghazi S, Cigna J, Lau YY, Moumni M, Chan KG, Faure D. Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium. International Journal of Systematic and Evolutionary Microbiology. 2019;69(2):470–475. DOI: 10.1099/ijsem.0.003180.
  10. Khayi S, Cigna J, Chong TM, Quȇtu-Laurent A, Chan KG, Hélias V, et al. Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov. International Journal of Systematic and Evolutionary Microbiology. 2016;66(12):5379–5383. DOI: 10.1099/ijsem.0.001524.
  11. Dees MW, Lysøe E, Rossmann S, Perminow J, Brurberg MB. Pectobacterium polaris sp. nov., isolated from potato (Solanum tuberosum). International Journal of Systematic and Evolutionary Microbiology. 2017;67(12):5222–5229. DOI: 10.1099/ijsem.0.002448.
  12. Waleron Malg, Misztak A, Waleron Mich, Jonca J, Furmaniak M, Waleron K. Pectobacterium polonicum sp. nov. isolated from vegetable fields. International Journal of Systematic and Evolutionary Microbiology. 2019;69(6):1751–1759. DOI: 10.1099/ijsem.0.003387.
  13. Sarfraz S, Riaz K, Oulghazi S, Cigna J, Sahi ST, Khan SH, et al. Pectobacterium punjabense sp. nov., isolated from blackleg symptoms of potato plants in Pakistan. International Journal of Systematic and Evolutionary Microbiology. 2018;68(11):3551–3556. DOI: 10.1099/ijsem.0.003029.
  14. Waleron Malg, Misztak A, Waleron Mich, Franczuk M, Jońca J, Wielgomas B, et al. Pectobacterium zantedeschiae sp. nov. a new species of a soft rot pathogen isolated from Calla lily (Zantedeschia spp.). Systematic and Applied Microbiology. 2019;42(3):275–283. DOI: 10.1016/j.syapm.2018.08.004.
  15. Pasanen M, Waleron M, Schott T, Cleenwerck I, Misztak A, Waleron K, et al. Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like type III secretion system and low virulence. International Journal of Systematic and Evolutionary Microbiology. 2020;70(4):2440–2448. DOI: 10.1099/ijsem.0.004057.
  16. Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, et al. Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 2012;13(6):614–629. DOI: 10.1111/j.1364-3703.2012.00804.x.
  17. Evtushenkov AN, Fomichev YuK. [Pectatlyase activity of the bacteria of the genus Erwinia]. Vestnik BGU. Seriya 2. Khimiya. Biologiya. Geografiya. 1978;2:25–28. Russian.
  18. Komar EI, Shavel’ MI, Pesnyakevich AG. [Identification of the gramnegative pectolytic phythopathogenic bacteria provoking potato diseases in Belarus]. Vestnik BGU. Seriya 2. Khimiya. Biologiya. Geografiya. 2014;2:54–60. Russian.
  19. Gorovik YuN, Lagonenko AL, Evtushenkov AN. [PCR detection of the bacteria Bacillus pumilus]. Trudy Belorusskogo gosudarstvennogo universiteta. Fiziologicheskie, biokhimicheskie i molekulyarnye osnovy funktsionirovaniya biosistem. 2014;9(part 1):162–166. Russian.
  20. Nassar A, Darrasse A, Lemattre M, Kotoujansky A, Dervin C, Vedel R, et al. Characterization of Erwinia chrysanthemi by pectinolytic isozyme polymorphism and restriction fragment length polymorphism analysis of PCR-amplified fragments of pel genes. Applied and Environmental Microbiology. 1996;62(7):2228–2235. DOI: 10.1128/aem.62.7.2228-2235.1996.
  21. Duarte V, De Boer SH, Ward LJ, de Oliveira AMR. Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil. Journal of Applied Microbiology. 2004;96(3):535–545. DOI: 10.1111/j.1365-2672.2004.02173.x.
  22. Lukianova AA, Evseev PV, Stakheev AA, Kotova IB, Zavriev SK, Ignatov AN, et al. Quantitative real-time PCR assay for the detection of Pectobacterium parmentieri, a causal agent of potato soft rot. Plants. 2021;10(9):1880. DOI: 10.3390/plants10091880.
  23. Ignatov AN, Khodykina MV, Dzhalilov FS, Karlov AN, Karandashov VE, Shirshikov FV, et al. Emergence and spreading of Dickeya solani & D. dianthicola on potato in Russia, and search for control measures. In: The 14th International symposium on biocontrol and biotechnology; 2016 November 6–9; Saint-Petersburg – Pushkin, Russia. [S. l.]: [s. n.]; 2016. p. 31.
  24. Motyka-Pomagruk A, Zoledowska S, Sledz W, Lojkowska E. The occurrence of bacteria from different species of Pectobacteriaceae on seed potato plantations in Poland. European Journal of Plant Pathology. 2021;159(2):309–325. DOI: 10.1007/s10658-020-02163-x.
  25. Voronina MV, Kabanova AP, Shneider MM, Korzhenkov AA, Toschakov SV, Miroshnikov KA, et al. First report of Pectobacterium carotovorum subsp. brasiliense causing blackleg and stem rot disease of potato in Russia. Plant Disease. 2019;103(2):364. DOI: 10.1094/PDIS-03-18-0456-PDN.
  26. Li Lei, Yuan Lifang, Shi Yanxia, Xie Xuewen, Chai Ali, Wang Qi, et al. Comparative genomic analysis of Pectobacterium carotovorum subsp. brasiliense SX309 provides novel insights into its genetic and phenotypic features. BMC Genomics. 2019;20:486. DOI: 10.1186/s12864-019-5831-x.
Published
2022-10-26
Keywords: soft rot, black leg of potato, Pectobacterium brasiliense, P. parmentieri, P. carotovorum, Bacillus pumilus
How to Cite
Chengyue, S., Gorovik, Y. N., Sidorova, S. G., & Evtushenkov, A. N. (2022). Identification of pectolytic bacterial species isolated during plant bacteriosis in the Republic of Belarus. Experimental Biology and Biotechnology, 3, 64-72. https://doi.org/10.33581/2957-5060-2022-3-64-72
Section
Biotechnology and Microbiology